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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs3019199 chr11:61176805 G/A 0.000101 407 15.63 18.22 14.47 KM Plot
LGG rs303 chr8:19817279 G/C 2.77E-6 387 15.7 14.03 16.37 KM Plot
LGG rs3030457 chr6:46930385 T/TGTCA 1.75E-5 403 15.03 16.37 12.5 KM Plot
LGG rs3096375 chr16:71279986 C/T 7.76E-5 407 15.37 15.13 4.77 KM Plot
LGG rs310639 chr20:62166682 T/G 1.48E-5 405 15.32 15.7 6.18 KM Plot
LGG rs310658 chr20:62173741 G/A 3.64E-5 403 15.32 16.68 5.73 KM Plot
LGG rs312 chr8:19817997 G/C 0.000102 388 15.67 14.37 14.8 KM Plot
LGG rs3131997 chr10:331859 A/G 8.2E-5 407 15.3 15.12 0 KM Plot
LGG rs316 chr8:19818436 C/A 9.75E-5 389 15.7 14.37 14.8 KM Plot
LGG rs3209637 chr3:10368948 C/T 9.14E-7 407 14.45 15.73 17.48 KM Plot
LGG rs33988059 chr16:1840362 G/A 4.86E-7 387 15.37 13.87 8.07 KM Plot
LGG rs34011742 chr1:224403641 G/T 0.000218 390 15.83 17.07 12.17 KM Plot
LGG rs34074526 chr5:94022902 G/T 4.06E-5 397 14.87 17.53 14.53 KM Plot
LGG rs34080397 chr9:126946745 CA/C 1.7E-6 405 15.37 11.1 12.92 KM Plot
LGG rs34080402 chr10:935086 T/TA 4.13E-6 404 15.13 17.73 10.57 KM Plot